Publications from this laboratory.



Articles

 

* = equal contribution authors; ° = co-corresponding authors 

2017


(47) M. Siavashpouri, C. Wachauf, M. Zakhary, F. Praetorius, H. Dietz°, and Z. Dogic°, 'Molecular engineering of chiral colloidal liquid crystals using DNA origami', 

Nature Materials, (2017), doi 10.1138/nmat4909

[publisher website]

 

 

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(46) F. Praetorius and H. Dietz, 'Self-assembly of genetically encoded DNA-protein hybrid nanoscale shapes', 

Science, (2017), vol 355, doi 10.1126/science.aam5488

[publisher website]

 

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praetorius_science_SM_2017.pdf
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perspective
by Shawn Douglas
douglas_science_perspective_2017.pdf
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2016


(45) J. Funke, P. Ketterer, C. Lieleg, P. Korber, and H. Dietz,

'Exploring nucleosome unwrapping using DNA origami', 

Nano Letters, (2016), doi 10.1021/acs.nanolett.6b04169

[publisher website] 

 

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funke_et_al_nanoletters_2016.pdf
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funke_et_al_nanoletter_2016_SI.pdf
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(44) J. Funke*, P. Ketterer*, C. Lieleg*, S. Schunter, P. Korber°, and H. Dietz°, 'Uncovering the forces between nucleosomes using DNA origami', 

Science Advances, (2016), doi 10.1126/sciadv.1600974

[publisher website]

 

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Funke_et_al_2016_scienceadvances_sm.pdf
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(43) T. Martin, T. Bharat, A. Joerger, X. Bai, F. Praetorius, A. Fersht, H. Dietz°, and S. Scheres°, 'The design of a molecular support for cryo-EM structure determination', 

Proc Natl Acad Sci USA, (2016), doi 10.1073/pnas.1612720113

[publisher website]

 

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Martin_et_al_pnas.201612720SI.pdf
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(42) B. Kick, S. Hensler, F. Praetorius, H. Dietz, and D. Weuster-Botz, 'Specific growth rate and multiplicity of infection affect high-cell-density fermentation with bacteriophage M13 for ssDNA production', 

Biotechnology and Bioengineering, (2016), doi 10.1002/bit.26200

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(41) F. Kilchherr, C. Wachauf, B. Pelz, M. Rief, M. Zacharias, and H. Dietz, 'Single-molecule dissection of stacking forces in DNA'

Science, (2016), doi 10.1126/science.aaf5508

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kilchherr_et_al_science2016_sm.pdf
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(40) S. Krishnan, D. Ziegler, V. Arnaut, T. Martin, K. Kapsner, K. Henneberg, A. Bausch, H. Dietz, and F. Simmel, 'Molecular transport through large-diameter DNA nanopores', 

Nature Communications, (2016), doi 10.1038/ncomms12787,

[publisher website]

 

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krishnan_NatureCommunications2016.pdf
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(39) E. Stahl, F. Praetorius, C. de Oliveira-Mann, K. Hopfner, and H. Dietz, 'Impact of heterogeneity and lattice bond strength of DNA triangle crystallization',  

ACS Nano, (2016), doi 10.1021/acsnano.6b04787

[publisher website]

 

 

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stahl_et_al_acsnano2016.pdf
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stahl_et_al_acsnano2016_sm.pdf
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(38) L. Rodrigues, K. Kyriakos, F. Schneider, H. Dietz, G. Winter, C. Papadakis, and M. Hubert, 'Characterization of lipid-based hexosomes as versatile vaccine carriers', 

Mol. Pharmaceutics, (2016), doi 10.1021/acs.molpharmaceut.6b00716 

 

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(37) L. Bruetzel, T. Gerling, S. Sedlak, P. Walker, W. Zheng, H. Dietz, and J. Lipfert, 'Conformational changes and flexibility of DNA devices observed by small-angle X‐ray scattering', 

Nano Letters, vol 16 (2016), p4871-4879, 

 

[publisher website]

 

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bruetzel_et_al_nanoletters2016_sm.pdf
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(36) H. Dietz, 'Toward Applications for DNA Nanotechnology - More Bricks to Build with', 

ChemBioChem, vol 17 (2016), p1046-1047 

[publisher website] - editorial 

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dietz_chembiochem2016.pdf
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(35) P. Ketterer, E. Willner, and H. Dietz,

'Nanoscale rotary apparatus formed from tight-fitting 3D DNA components', 

Science Advances, vol 2 (2016), e1501209 

 

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ketterer_et_al_ScienceAdv2016.pdf
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1501209_SM.pdf
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2015


(34) J. Funke and H. Dietz, 'Placing molecules with Bohr radius resolution using DNA origami', 

Nature Nanotechnology, (2015), doi 10.1038/nnano.2015.240 

 

[publisher website]

 

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funke_NatureNano_2015_SI.pdf
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(33) H. Dietz, 'Nanoscale cable tacking'

Nature Nanotechnology, vol 10 (2015), p829-830, [publisher website] - comment on work by Gothelf and colleagues 

 

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dietz_NatureNano2015.pdf
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(32) J. Sobczak and H. Dietz

'DNA-nanoparticle crystals: Exploiting shape complementarity', 

Nature Materials, vol 14 (2015), p752-754, [publisher website] - comment on work by Mirkin and Gang 

 

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sobczak_et_al_NatureMat2015.pdf
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(31) B. Kick, F. Praetorius, H. Dietz, and D. Weuster-Botz

'Efficient production of single-stranded DNA as scaffolds for DNA origami', 

Nano Letters, vol 15 (2015), p4672-4676

 

[publisher website]

 

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kick_et_al_Nanolett2015.pdf
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(30) T. Gerling, K. Wagenbauer, A. Neuner, and H. Dietz

'Dynamic DNA devices and assemblies formed by shape-complementary, non-basepairing 3D components'

Science, vol 347 (2015), p1446-1452

 

[publisher website]

 

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gerling_et_al_Science2015.pdf
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gerling_et_al_Science2015.pdf
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perspective
perspective_shih_Science2015.pdf
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(29) C. Lieleg, P. Ketterer, J. Nuebler, J. Ludwigsen, U. Gerland, H. Dietz, F. Mueller-Planitz, and P. Korber

'Nucleosome spacing generated by ISWI and CHD1 remodelers is constant regardless of nucleosome density'

Molecular and Cellular Biology, vol 35 (2015), 1588-1605

 

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lieleg_et_al_molcellbiol2015.pdf
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2014


(28) C. Plesa, N. van Loo, P. Ketterer, H. Dietz, and C. Dekker

'Velocity of DNA during translocation through a solid state nanopore'

Nano Letters, (2014), doi 10.1021/nl504375c 

 

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(27) E. Stahl, T. Martin, F. Praetorius, and H. Dietz, 'Facile and scalable preparation of pure and dense DNA origami solutions', 

Angewandte Chemie Intl. Edn., vol 53 (2014), p12735

 

[publisher website]

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stahl_et_al_angew2014_suppl.pdf
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(26) H. Cui, B. Seubert, E. Stahl, H. Dietz, U. Reuning, L. Moreno-Leon, M. Ilie, P. Hofman, H. Nagase, B. Mari, and A. Krüger, 'Tissue inhibitor of metalloproteinases-1 induces a pro-tumourigenic increase of miR-210 in lung adenocarcinoma cells and their exosomes', 

Oncogene, vol 34 (2014), p3640-3650 

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(25) B. Shen, V. Linko, H. Dietz, and J. Toppari

'Dielectrophoretic trapping of multilayer DNA origami nanostructures and DNA origami -induced local destruction of silicon dioxide'

Electrophoresis, (2014), doi: 10.1002/elps.201400323 

 

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shen_et_al_elps20145285_suppl.pdf
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(24) K. Wagenbauer*, C. Wachauf*, and H. Dietz

'Quantifying Quality in DNA Self-Assembly'

Nature Communications, 5:3691 (2014), doi: 10.1038/ncomms4691 

 

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wagenbauer_ncomms4691-s1.pdf
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(23) C. Plesa, A. Adithya, V. Linko, C. Gulcher, A. Katan, H. Dietz, and C. Dekker, 'Ionic Permeability and Mechanical Properties of DNA Origami Nanoplates on Solid-State Nanopores'

ACS Nano, vol 8 (2014), p35

 

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nn405045x.pdf
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nn405045x_si_001.pdf
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2013


(22) E. Pfitzner*, C. Wachauf*, F. Kilchherr*, B. Pelz, W. Shih, M. Rief, and H. Dietz, 'Rigid DNA beams for high-resolution single-molecule mechanics', 

Angewandte Chemie Intl. Edn., vol 52 (2013), p7766

 

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anie_201302727_sm.pdf
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(21) V. Linko and H. Dietz, 'The enabled state of DNA nanotechnology', 

Curr Opin Biotechnol, (2013), doi: 10.1016/j.copbio.2013.02.001 

 

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2012


(20) J. Sobczak, T. Martin, T. Gerling, and H. Dietz, 'Rapid folding of DNA into nanoscale shapes at constant temperature', 

Science, vol 338 (2012), p1458 

 

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supplementary material
1229919.Sobczak.SM.pdf
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(19) X. Bai, T. Martin, S. Scheres°, and H. Dietz°

'Cryo-EM structure of a 3D DNA-origami object'

P Natl Acad Sci USA, vol 109 (2012), 20012 

 

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pnas.201215713SI.pdf
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(18) M. Langecker*, V. Arnaut*, T. Martin*, J. List, S. Renner, M. Mayer, H. Dietz°, and F. Simmel° 'Synthetic lipid membrane channels formed by designed DNA nanostructures'

Science, vol 338 (2012), p932 

 

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Langecker.SM.pdf
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(17) T. Martin and H. Dietz

'Magnesium-free self-assembly of multi-layer DNA objects'

Nature Communications, vol 3 (2012), #1103 

 

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mg_free_self_assembly.pdf
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ncomms2095-s1.pdf
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(16) R. Wei*, T. Martin*, U. Rant°, and H. Dietz°

'DNA origami gatekeepers for solid-state nanopores'

Angewandte Chemie Intl. Edn., vol 51 (2012), p4864

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DNA_origami_gatekeepers.pdf
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supporting_information_gatekeepers.pdf
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(15) D. Kim, F. Kilchherr, H. Dietz°, and M. Bathe°, 'Quantitative prediction of 3D solution shape and flexibility of nucleic acid nanostructures', 

Nucleic Acids Research, vol 40 (2012), p2862

 

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cando_nar_supplement.pdf
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2011


(14) M. Vukajlovic, H. Dietz, M. Schliwa, and Z. Ökten

'How kinesin-2 forms a stalk'

Molecular Biology of the Cell, vol 22 (2011), p4279 

 

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(13) C. Castro, F. Kilchherr, D. Kim, E. Shiao, T. Wauer, P. Wortmann, M. Bathe, and H. Dietz, 'A primer to scaffolded DNA origami', 

Nature Methods, vol 8 (2011), p221 

 

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primer_supplement.pdf
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Patents

F. Praetorius and H. Dietz.

'Scalable biotechnological production of DNA single strand molecules of defined sequence and length'

(submitted)

 

M. Langecker, V. Arnaut, T. Martin, F.C. Simmel, and H. Dietz.

'Nucleic acid based nanopores or transmembrane channels and their uses'

EP 2695949 A1 (granted)

 

M. Bathe, D.N. Kim, H. Dietz.

'Method and Apparatus for Controlling Properties of Nucleic Acid Nanostructures'

US Patent No. 12/976,737 (granted) 

 

H. Dietz and T. Liedl

'Modifying structures, preferably biocompatible three-dimensional microstructures in a matrix comprises providing matrix made of liquid matrix material, adding a liquid crosslinking agent using injection pipette and moving the pipette'

DE102008020665-A1 (pending decision)